Lower fungi
- Mesomycetozoa, Dermocystida. Genus: RHINOSPORIDIUM
- Rhinosporidium seeberi (Wernicke) Seeber
- Chromista: Oomycota
- Chromista, Oomycota, Peronosporales, Pythiaceae. Genus: LAGENIDIUM
- Lagenidium ajelloi Newton et al.
- Lagenidium albertoi Chindraporn et al.
- Lagenidium giganteum Couch
- Chromista, Oomycota, Peronosporales, Pythiaceae. Genus: PYTHIUM
- Pythium aphanidermatum (Edson) Fitzpatrick
- Pythium insidiosum de Cock et al.
- Pythium periculosum Vilela & Mendoza
- Chlorophyta
- Chlorophyta, Trebouxiophyceae, Chlorellales, Chlorellaceae. Genus: PROTOTHECA
- Prototheca blaschkeae Roesler et al.
- Prototheca bovis Jagielski et al.
- Prototheca ciferrii Negroni & Blastein
- Prototheca cutis Satoh & Makimura
- Prototheca miyajii Masuda et al.
- Prototheca wickerhamii Tsubaki & Soneda
- Kingdom Fungi (Eumycota)
- Chytridiomycota, Chytridiomycetes, Rhizophydiales. Genus: BATRACHOCHYTRIUM
- Batrachochytrium dendrobatidis Longcore et al.
- Batrachochytrium salamandrivorans Martel et al.
- Mucoromycotina, Mucorales; Mortiellomycotina, Mortierellales
- Mucoromycotina, Mucorales, Mucoraceae. Genus: ACTINOMUCOR
- Actinomucor elegans (Eidam) C.R. Benjamin & Hesseltine
- Mucoromycotina, Mucorales, Saksenaeaceae. Genus: APOPHYSOMYCES
- Apophysomyces elegans Misra et al.
- Apophysomyces mexicanus Bonifaz et al.
- Apophysomyces ossiformis Álvarez et al.
- Apophysomyces trapeziformis Álvarez et al.
- Apophysomyces variabilis Álvarez et al.
- Mucoromycotina, Mucorales, Mucoraceae. Genus: CHLAMYDOABSIDIA
- Chlamydoabsidia padenii Hesseltine & Ellis
- Mucoromycotina, Mucorales, Thamnidiaceae. Genus: COKEROMYCES
- Cokeromyces recurvatus Poitras
- Mucoromycotina, Mucorales, Cunninghamellaceae. Genus: CUNNINGHAMELLA
- Cunninghamella arunalokei Hallur et al.
- Cunninghamella bertholletiae Stadel
- Cunninghamella blakesleeana Lendn.
- Cunninghamella elegans Lendn.
- Cunninghamella guizhouensis Z.Y. Zhang et al.
- Mucoromycotina, Mucorales, Lichtheimiaceae. Genus: LICHTHEIMIA
- Lichtheimia corymbifera (Cohn) Vuill.
- Lichtheimia ornata (Sarbhoy) Alastr.-Izq. & Walther
- Lichtheimia ramosa (Lindt) Vuill.
- Mortierellomycotina, Mortierellales, Mortierellaceae. Genus: MORTIERELLA
- Mortierella polycephala Coemans
- Mortierella wolfii Mehrotra & Baijal
- Mucoromycotina, Mucorales, Mucoraceae. Genus: MUCOR
- Mucor amphibiorum Schipper
- Mucor circinelloides v. Tiegh. member of M. circinelloides complex
- Mucor hiemalis Wehmer
- Mucor indicus Lendner
- Mucor irregularis Stchigel et al.
- Mucor lusitanicus Bruderlein member of M. circinelloides complex
- Mucor luteus Linnem. ex Wrzosek.
- Mucor racemosus Fres.
- Mucor ramosissimus Samutsevich member of M. circinelloides complex
- Mucor velutinosus Álvarez et al. member of M. circinelloides complex
- Mucoromycotina, Mucorales, Mycotyphaceae. Genus: MYCOTYPHA
- Mycotypha microspora Fenner
- Mucoromycotina, Mucorales, Thamnidiaceae. Genus: RHIZOMUCOR
- Rhizomucor miehei (Cooney & Emerson) Schipper
- Rhizomucor pusillus (Lindt) Schipper
- Mucoromycotina, Mucorales, Rhizopodaceae. Genus: RHIZOPUS
- Rhizopus arrhizus Fischer
- Rhizopus azygosporus Yuan & Jong
- Rhizopus homothallicus Hesseltine & J.J. Ellis
- Rhizopus microsporus v. Tiegh.
- Rhizopus schipperae Weitzman et al.
- Rhizopus stolonifer (Ehrenb.:Fr.) Vuill.
- Mucoromycotina, Mucorales, Saksenaeaceae. Genus: SAKSENAEA
- Saksenaea erythrospora Álvarez et al.
- Saksenaea oblongispora Álvarez et al.
- Saksenaea vasiformis Saksena
- Mucoromycotina, Mucorales, Syncephalastraceae. Genus: SYNCEPHALASTRUM
- Syncephalastrum racemosum Cohn
- Mucoromycotina, Mucorales, Thamnidiaceae. Genus: THAMNOSTYLUM
- Thamnostylum lucknowense (J.N. Rai et al.) v. Arx & Upadhyay
- Zoopagomycota, Entomophthoromycotina, Entomophthorales
- Zoopagomycota, Entomophthoromycotina, Entomophthorales, Basidiobolaceae. Genus: BASIDIOBOLUS
- Basidiobolus haptosporus Drechsler member of B. ranarum complex
- Basidiobolus meristosporus Drechsler member of B. ranarum complex
- Basidiobolus omanensis Al-Hatmi et al. member of B. ranarum complex
- Basidiobolus ranarum Eidam member of B. ranarum complex
- Zoopagomycota, Entomophthoromycotina, Entomophthorales, Anylistaceae. Genus: CONIDIOBOLUS
- Conidiobolus coronatus (Cost.) Batko
- Conidiobolus incongruus Drechsler
- Conidiobolus lamprauges Drechsler
- Zoopagomycota, Entomophthoromycotina, Entomophthorales, Ancylistaceae. Genus: NEOCONIDIOBOLUS
- Neoconidiobolus pachyzygosporus (Y. Nie & B. Huang) B. Huang & Y. Nie